Proteome Informatics | Computational Mass Spectrometry
We support and perform data analysis with mass spectrometry generated data ranging from protein and peptide identification, and quantitative proteomics, to PTM analysis and integration of different data types using well established software tools and following best practices to mass spectrometry imaging and spatial proteomics.
For data handling and annotation we are using our in-house developed laboratory information management system (LIMS) external pageB-Fabric.
Example analyses:
We also develop shiny-applications, among others, external pagerawDiag for interactive quality control, data visualization and exploration.
Below there is a listing of developed and maintained software solutions available through comprehensive code archives as CRAN and Bioconductor.
Our whole team are external pageSIB members.
For details and a complete list contact us at or at
Custom Services and Collaborative Research
We meet special needs for bioinformatics and biostatistics by custom data analysis through a dedicated bioinformatician. We support small well defined analysis questions as well as joint data analysis for multi-year projects. We limit ourselves to topics where any of the data types produced at our center plays a major role. Within that frame we also support integration with public data or other phenotype data (e.g. clinical information, imaging data, …).
A custom analysis can be implemented as a service (contract research), shared employment or by co-application for research grants. For more details:
Recent highlights
